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ylxM [2019-07-01 11:08:04]
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ylxM [2019-07-01 11:08:04]

putative signal recognition particle (SRP) component
locus
BSU15970
pI
4.54
mw
13.02 kDa
protein length
110 aa Sequence Blast
gene length
333 bp Sequence Blast
function
presecretory protein translocation
product
putative signal recognition particle (SRP) component
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.5|Protein secretion]

    • Gene

    Coordinates
    1,671,828 1,672,160

    The protein

    Protein family

  • UPF0122 family (according to Swiss-Prot)

    • Structure

  • [PDB|1XSV] (from ''Staphylococcus aureus'', 54% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|8F559BFC80FE56EA0389A2336F4E9E6908562BCB|ylxM]-[gene|EC025F78D0BCBD91162BAAB9EAB7D3837E0A3208|ffh]-[gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP]-[gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]-[gene|0AB1FB44E8F28944B82B5EF14A9CDCFEE46DB76B|ylqD]-[gene|34B0FA6E7E25D1E5D8A54B70F5562BD0BD05B498|rimM]-[gene|885ECD9FAAC8BC95D32F049825D6B6244C046112|trmD]-[gene|51368512B8322EDBCA92674EC2B97CF26087D8A9|rplS]
    description
    [Pubmed|29794222]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|8335643], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulation

  • the mRNA is processed between [gene|EC025F78D0BCBD91162BAAB9EAB7D3837E0A3208|ffh] and [gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]
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    Biological materials

    Mutant

  • BKE15970 ([gene|8F559BFC80FE56EA0389A2336F4E9E6908562BCB|ylxM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE15970 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGAGCTCTCCCCTTTG, downstream forward: _UP4_AAATTAGATTAGGAGGCGGC
  • BKK15970 ([gene|8F559BFC80FE56EA0389A2336F4E9E6908562BCB|ylxM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK15970 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGAGCTCTCCCCTTTG, downstream forward: _UP4_AAATTAGATTAGGAGGCGGC

    • References

  • 8335643,24659773